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Publications
| 2024 |
Associations between CAG repeat polymorphism in the androgen receptor gene with sex steroid levels and anthropometrics among men: a role of ethnic factor.
Osadchuk L.V., Vasiliev G.V., Osadchuk A.V.
[Vavilov journal of genetics and breeding]
|
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Ассоциации CAG-полиморфизма гена андрогенового рецептора с уровнем стероидных гормонов и антропометрическими показателями у мужчин: роль этнического фактора.
Осадчук Л.В., Васильев Г.В., Осадчук А.В.
[Vavilov journal of genetics and breeding]
|
| 2023 |
Population Structure and Genetic Diversity of the 175 Soybean Breeding Lines and Varieties Cultivated in West Siberia and Other Regions of Russia
Nadezhda A. Potapova, Alexander S. Zlobin, Roman N. Perfil’ev, Gennady V. Vasiliev, Elena A. Salina, Yakov A. Tsepilov
[Plants]
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Analysis of Genome Structure and Its Variations in Potato
Cultivars Grown in Russia
Dmitry I. Karetnikov, Gennady V. Vasiliev, Stepan V. Toshchakov, Nikolay A. Shmakov, Mikhail A. Genaev, Mikhail A. Nesterov, Salmaz M. Ibragimova, Daniil A. Rybakov,
Tatjana A. Gavrilenko, Elena A. Salina, Maxim V. Patrushev, Alex V. Kochetov and Dmitry A. Afonnikov
[INT J MOL SCI]
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Cases of paternal inheritance and recombination of mitochondrial DNA in peas (Pisum L.)
Bulgakova (Bogdanova) V.S., Shatskaya N.V., Kosterin O.E., Vasiliev G.V.
[EUPHYTICA]
|
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Drosophila melanogaster Transcriptome Response to Different Wolbachia Strains
Gruntenko, N.E.; Deryuzhenko, M.A.; Andreenkova, O.V.; Shishkina, O.D.; Bobrovskikh, M.A.; Shatskaya, N.V.; Vasiliev, G.V.
[INT J MOL SCI]
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New insights into plastid and mitochondria evolution in wild peas (Pisum L.)
Shatskaya N.V., Bogdanova V.S., Kosterin O.E., Vasiliev G.V.
[Diversity]
|
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The Expression of miRNAs Involved in Long-Term Memory Formation in the CNS of the Mollusk Helix lucorum
Gennady V. Vasiliev, Vladimir Y. Ovchinnikov, Pavel D. Lisachev, Natalia P. Bondar, and Larisa N. Grinkevich
[INT J MOL SCI]
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Three Cycles of Continuous Propagation of a Severe PSTVd
Strain NicTr-3 in Solanum lycopersicum cv. Rutgers Resulted in Its Attenuation and Very Mild Disease Symptoms in Potato
Alex V. Kochetov, Nikolay Shmakov, Dmitry A. Afonnikov, Gennady V. Vasiliev, Natalja V. Shatskaya, Anastasiya A. Egorova, Nina V. Mironenko, Nina M. Lashina, Alexander V. Khiutti and Olga S. Afanasenko
[Agronomy]
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WAX INDUCER 1 Regulates β-Diketone Biosynthesis by Mediating Expression of the Cer-cqu Gene Cluster in Barley
Gerasimova, S.V.; Kolosovskaya, E.V.; Vikhorev, A.V.; Korotkova, A.M.; Hertig, C.W.; Genaev, M.A.; Domrachev, D.V.; Morozov, S.V.; Chernyak, E.I.; Shmakov, N.A.; Vasiliev, G.V.; Kochetov, A.V.; Kumlehn, J.; Khlestkina, E.K.
[INT J MOL SCI]
|
| 2022 |
Androgen receptor gene CAG repeat length varies and affects semen quality in an ethnic-specific fashion in young men from Russia
Osadchuk L., Vasiliev G., Kleshchev M., Osadchuk A.
[INT J MOL SCI]
|
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Easy and Effective Method for Extracting and Purifying Wolbachia Genomic DNA
Andreenkova O.V., Shishkina O.D., Klimenko A.I., Korenskaia A.E., Bobrovskikh M.A., Shatskaya N.V., Vasiliev G.V., Gruntenko N.E.
[INT J MOL SCI]
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Features of activity of the phenylpropanoid biosynthesis pathway in melanin-accumulating barley grains
Anastasiia Y. Glagoleva, Alexander V. Vikhorev, Nikolay A. Shmakov, Sergey V. Morozov, Elena I. Chernyak, Gennady V. Vasiliev, Natalia V. Shatskaya, Elena K. Khlestkina, Olesya Y. Shoeva
[Frontiers in Plant Science]
|
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New Wolbachia pipientis Genotype Increasing Heat Stress Resistance of Drosophila melanogaster Host Is Characterized by a Large Chromosomal Inversion
Korenskaia A.E., Shishkina O.D., Klimenko A.I., Andreenkova O.V., Bobrovskikh M.A., Shatskaya N.V., Vasiliev G.V., Gruntenko N.E.
[INT J MOL SCI]
|
| 2021 |
Autophagy genes expression profiling in secondary glioblastoma cells transcriptome
Gubanova N., Bragin A., Vasiliev G., Babenko V., Ponomarenko M., Orlov Y.
[Cell Death Discovery]
|
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Fitness Analysis and Transcriptome Profiling Following Repeated Mild Heat Stress of Varying Frequency in Drosophila melanogaster Females
Gruntenko NE, Karpova EK, Babenko VN, Vasiliev GV, Andreenkova OV, Bobrovskikh MA, Menshanov PN, Babenko RO, Rauschenbach IY.
[Biology]
|
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A bioinformatics model of human diseases on the basis of differentially expressed genes (of domestic versus wild animals) that are orthologs of human genes associated with reproductive-potential changes.
Vasiliev G, Chadaeva I, Rasskazov D, Ponomarenko P, Sharypova E, Drachkova I, Bogomolov A, Savinkova L, Ponomarenko M, Kolchanov N, Osadchuk A, Oshchepkov D, Osadchuk L.
[INT J MOL SCI]
|
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Discordant evolution of organellar genomes in peas (Pisum L.)
Bogdanova V.S., Shatskaya N.V., Mglinets a.v., Kosterin O.E., Vasiliev G.V.
[MOL PHYLOGENET EVOL]
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E. coli aggregation and impaired cell division after terahertz irradiation.
1. Peltek S, Meshcheryakova I, Kiseleva E, Oshchepkov D, Rozanov A, Serdyukov D, Demidov E, Vasiliev G, Vinokurov N, Bryanskaya A, Bannikova S, Popik V, Goryachkovskaya T.
[SCI REP-UK]
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Microorganisms of two thermal pools on Kunashir Island, Russia
Rozanov A.S., Korzhuk A.V., Shekhovtsov S.V., Vasiliev G.V., Peltek S.E.
[Biology]
|
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NLR Genes Related Transcript Sets in Potato Cultivars Bearing Genetic Material of Wild Mexican Solanum Species
Kochetov A.V., Afonnikov D.A., Shmakov N.A., Vasiliev G.V., Antonova O.Y., Shatskaya N.V., Glagoleva A.Y., Ibragimova S.M., Khiutti A., Afanasenko O.S., Gavrilenko T.A.
[Agronomy]
|
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Whole-exome sequencing analysis of human semen quality in Russian multiethnic population
Kolmykov S., Vasiliev G., Osadchuk L., Kleshchev M., Osadchuk A.
[Frontiers in Genetics]
|
| 2020 |
Disruptive natural selection by male reproductive potential prevents underexpression of protein-coding genes on the human Y chromosome as a self-domestication syndrome.
Ponomarenko M., Kleshchev M., Ponomarenko P., Chadaeva I., Sharypova E., Rasskazov D., Kolmykov S., Drachkova I., Vasiliev G., Gutorova N., Ignatieva E., Savinkova L., Bogomolov A., Osadchuk L., Osadchuk A., Oshchepkov D.
[BMC GENET]
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Species Delimitation of the Eisenia nordenskioldi Complex (Oligochaeta, Lumbricidae) Using Transcriptomic Data
Sergei V. Shekhovtsov, Aleksandra A. Shipova, Tatiana V. Poluboyarova, Gennady V. Vasiliev, Elena V. Golovanova, Anna P. Geraskina, Nina A. Bulakhova, Tímea Szederjesi, Sergei E. Peltek
[Frontiers in Genetics]
|
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The first mitochondrial genome of the relic Acanthobdella peledina (Annelida, Acanthobdellida)
Alexander Bolbat, Gennady Vasiliev and Irina Kaygorodova
[MITOCHONDR DNA]
|
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The mechanism of potato resistance to
Globodera rostochiensis: comparison of root
transcriptomes of resistant and susceptible
Solanum phureja genotypes
Alex V. Kochetov, Anastasiya A. Egorova, Anastasiya Y. Glagoleva, Kseniya V. Strygina, Elena K. Khlestkina,
Sophia V. Gerasimova, Natalja V. Shatskaya, Gennady V. Vasilyev, Dmitry A. Afonnikov, Nikolay A. Shmakov,
Olga Y. Antonova, Natalia V. Alpatyeva, Alexander Khiutti, Olga S. Afanasenko and Tatjana A. Gavrilenko
[BMC PLANT BIOL]
|
| 2019 |
The plastid and mitochondrial genomes of Vavilovia formosa (Stev.) Fed. and the phylogeny of related legume genera
Shatskaya N.V., Bogdanova V.S., Kosterin O.E., Vasiliev G.V., Kimeklis A.K., Andronov E.E., Provorov E.A.
[Vavilov journal of genetics and breeding]
|
|
Transcriptomic analysis confirms differences among nuclear genomes of cryptic earthworm lineages living in sympatry
Shekhovtsov S.V., Ershov N.I., Vasiliev G.N., Peltek S.E.
[BMC EVOL BIOL]
|
| 2018 |
Cryptic divergences in the genus Pisum L. (peas), as revealed by phylogenetic analysis of plastid genomes
Bogdanova V.S., Mglinets A.V., Shatskaya N.V., Kosterin O.E., Solovyev V.I., Vasiliev G.V.
[MOL PHYLOGENET EVOL]
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Исследование экспрессии генов рецептора глюкокортикоидов и микроРНК в гиппокампе и концентрации кортизола в крови у лисиц, селекционируемых по реакции на человека
(Hippocampal glucocorticoid receptor and microRNA gene expression and serum cortisol concentration in foxes selected for behavior toward humans)
В.Ю. Овчинников, Е.В. Антонов, Г.В. Васильев, С.Г. Шихевич, Д.В. Шепелева, Ю.Э. Гербек
[Vavilov journal of genetics and breeding]
|
| 2017 |
Auxin regulates functional gene groups in a fold-change-specific manner in Arabidopsis thaliana roots
N. A. Omelyanchuk, D. S. Wiebe, D. D. Novikova, V. G. Levitsky, N. Klimova, V. Gorelova, C. Weinholdt, G. V. Vasiliev, E. V. Zemlyanskaya, N. A. Kolchanov, A. V. Kochetov, I. Grosse, V. V. Mironova
[SCI REP-UK]
|
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Computer Analysis of Glioma Transcriptome Profiling: Alternative Splicing Events
Babenko V.N., Gubanova N.V., Bragin A.O, Chadaeva I.V., Vasiliev G.V., Medvedeva I.V., Gaytan A.S., Krivoshapkin A.L., Orlov Yu.L.
[J INTEGR BIOINFORM]
|
|
Deterministic versus stochastic model of reprogramming: new evidence from cellular barcoding technique
Anastasia M. Yunusova, Veniamin S. Fishman, Gennady V. Vasiliev, Nariman R. Battulin.
[OPEN BIOL]
|
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Differential expression of NBS-LRR-encoding genes in the root transcriptomes of two Solanum phureja genotypes with contrasting resistance to Globodera rostochiensis
Alex V. Kochetov, Anastasiya Y. Glagoleva, Kseniya V. Strygina, Elena K. Khlestkina, Sophia V. Gerasimova, Salmaz M. Ibragimova, Natalja V. Shatskaya, Gennady V. Vasilyev, Dmitry A. Afonnikov, Nikolay A. Shmakov, Olga Y. Antonova, Tatyana A. Gavrilenko, Natalia V. Alpatyeva, Alexander Khiutti, Olga S. Afanasenko
[BMC PLANT BIOL]
|
|
Metabolic pathways and genes identified by RNA-seq analysis of barley near-isogenic lines differing by allelic state of the Black lemma and pericarp (Blp) gene
Anastasiya Y. Glagoleva, Nikolay A. Shmakov, Olesya Y. Shoeva, Gennady V. Vasiliev, Natalia V. Shatskaya, Andreas Börner, Dmitry A. Afonnikov, Elena K. Khlestkina
[BMC PLANT BIOL]
|
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RNAseq-BASED DECIFERING OF MOLECULAR MECHANISMS UNDERLYING TRAIT FORMATION: NON-ALTERNATIVE WAY IN CASE OF IMPEDED METABOLITE IDENTIFICATION
Glagoleva A.Y., Shmakov N.A., Shoeva O. Y., Vasiliev G.V., Shatskaya N.V., Börner A., Afonnikov D.A., Khlestkina E.K.
[Acta Naturae]
|
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Статистические оценки ошибок коротких прочтений ДНК при высокопроизводительном секвенировании
Васильев Г.В., Орлова Н.Г., Абнизова И.И., те Боекхорст Р., Орлов Ю.Л.
[Acta Naturae]
|
| 2016 |
Identification of microsatellite loci based on BAC sequencing data and their physical mapping into the soft wheat 5B chromosome
Nesterov M.A., Afonnikov D.A., Sergeeva E.M., Miroshnichenko L.A., Bragina M.K., Bragin A.O., Vasiliev G.V., Salina E.A.
[Russian Journal of Genetics: Applied Research]
|
|
Hidden Heterogeneity of Transcription Factor Binding Sites: A Case Study of SF-1
V.G. Levitsky, D.Yu. Oshchepkov, N.V. Klimova, E.V Ignatieva, G.V. Vasiliev, V.M. Merkulov, T.I. Merkulova
[COMPUT BIOL CHEM]
|
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Identification of nuclear genes controlling chlorophyll synthesis in barley by RNA-seq
Shmakov N.A., Vasiliev G.V., Shatskaya N.V., Doroshkov A.V., Gordeeva E.I., Afonnikov D.A., Khlestkina E.K.
[BMC PLANT BIOL]
|
| 2015 |
Identification of microRNA genes in three opisthorchiids
Ovchinnikov VY, Afonnikov DA, Vasiliev GV, Kashina EV, Sripa B, Mordvinov VA, Katokhin AV.
[PLOS NEGLECT TROP D]
|
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Nuclear-cytoplasmic conflict in pea (Pisum sativum L.) is associated with nuclear and plastidic candidate genes encoding Acetyl-CoA carboxylase subunits
Bogdanova V.S., Zaytseva O.O., Mglinets A.V., Shatskaya N.V., Kosterin O.E., Vasiliev G.V.
[PloS One]
|
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Идентификация микросателлитных локусов по данным секвенирования ВАС-клонов и их физическое картирование на хромосому 5B мягкой пшеницы.
М.А. Нестеров, Д.А. Афонников, Е.М. Сергеева, Л.А. Мирошниченко, М.К. Брагина, А.О. Брагин, Г.В. Васильев, Е.А. Салина.
[Vavilov journal of genetics and breeding]
|
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Регуляторная геномика – экспериментально-компьютерные подходы
Е. В. Игнатьева, О. А. Подколодная, Ю. Л. Орлов, Г. В. Васильев, Н. А. Колчанов
[RUSS J GENET+]
|
| 2014 |
ChIP-seq данные и их анализ
Орлов Ю.Л., Васильев Г.В., Кулакова Е.В., Колчанов Н.А.
[Молекулярная и прикладная генетика]
|
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Геномика
Васильев Геннадий Владимирович
[Vavilov journal of genetics and breeding]
|
| 2013 |
Adult Opisthorchis felineus major protein fractions deduced from transcripts: Comparison with liver flukes Opisthorchis viverrini and Clonorchis sinensis.
Pomaznoy M., Tatkov S., Katokhin A., Afonnikov D., Babenko V., Furman D., Brusentsov I., Belavin P., Najakshin A., Guselnikov S., Vasiliev G., Sivkov A., Prokhortchouk E., Skryabin K., Mordvinov V.
[EXP PARASITOL]
|
| 2012 |
Unbiased approach to profile the variety of small non-coding RNA of human blood plasma with massively parallel sequencing technology.
Semenov DV, Baryakin DN, Brenner EV, Kurilshikov AM, Vasiliev GV, Bryzgalov LA(LO), Chikova ED, Filippova JA, Kuligina EV, Richter VA.
[Expert Opin Biol Ther.]
|
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Метаболит циклофосфамида, запускающий апоптоз в клетках лимфосаркомы мыши RLS, является субстратом для Р-гликопротеина.
Патутина О., Миронова Н., Логашенко Е., Попова Н., Николин В., Васильев Г., Каледин В., Зенкова М., Власов В.
[B EXP BIOL MED+]
|
| 2011 |
Analysis of Data on Large Scale Chromatin Immunoprecipitation by Recognition of Transcription Factor Binding Sites
VG Levitskii, GV Vasil’ev, DYu Oshchepkov, NI Ershov, and TI Merkulova
[Russian Journal of Genetics: Applied Research]
|
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Разработка методов распознования сайтов связывания транскрипционных факторов FoxA, их экспериментальная верификация и использование для анализа данных массовой иммунопреципитации хроматина
Левицкий В. Г., Ощепков Д. Ю., Ершов Н. И., Брызгалов Л. О., Антонцева Е. В., Васильев Г. В., Меркулова Т. И., Колчанов Н. А.
[Doklady Akademii Nauk]
|
| 2010 |
Анализ результатов эксперимента по массовой иммунопреципитации хроматина с помощью методов распознавания сайтов связывания транскрипционных факторов
Левицкий В.Г., Васильев Г.В., Ощепков Д.Ю., Ершов Н.И., Меркулова Т.И.
[Информационный вестник ВОГИС]
|
| 2009 |
Выявление новых сайтов транскрипционных факторов SREBP в промоторных районах генов позвоночных на основе комбинации биоинформационного и экспериментального подходов
Е.В. Игнатьева, Т.И. Меркулова, Д.Ю. Ощепков, Н.В. Климова, Г.В. Васильев, И.И. Турнаев, В.Ф. Кобзев, Н.А. Колчанов
[Информационный вестник ВОГИС]
|
| 2008 |
Expression of MAP/ERK kinase cascade corresponds to the ability to develop food aversion in terrestrial snail at different stages of ontogenesis
Grinkevich LN, Lisachev PD, Kharchenko OA, Vasil'ev GV
[BRAIN RES]
|
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Нарушение функционирования соматических клеток в яйцевых камерах Drosophila melanogaster у мутантов по гену trithorax-like
Огиенко А.А., Лаухина О.В., Васильев Г.В., Баричева Э.М.
[Информационный вестник ВОГИС]
|
| 2007 |
Bioinformatical and experimental approaches to investigation of transcription factor binding sites in vertebrate gene
Merkulova T. I., Oshchepkov D. Yu., Ignatieva E. V., Ananko E. A., Levitsky V. G., Vasiliev G. V., Klimova N. V. , Merkulov V. M., Kolchanov N. A.
[BIOCHEMISTRY-MOSCOW+]
|
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Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes
Kolchanov NA, Merkulova TI, Ignatieva EV, Ananko EA, Oshchepkov DY, Levitsky VG, Vasiliev GV, Klimova NV, Merkulov VM, Hodgman TC
[BRIEF BIOINFORM]
|
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Search for new binding sites for the transcription factor SF-1 by the SITECON method: experimental verification and analysis of regulatory regions of orthologous genes
Ignat'eva EV, Klimova NV, Oshchepkov DY, Vasil'ev GV, Merkulova TI, Kolchanov NA.
[Doklady Biochemistry and Biophysics]
|
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Поиск новых сайтов связывания транскрипционного фактора SF1 методом SITECON: экспериментальная проверка и анализ регуляторных районов генов-ортологов.
Игнатьева Е. В., Климова Н. В., Ощепков Д. Ю., Васильев Г. В., Меркулова Т. И., Колчанов Н. А.
[Doklady Akademii Nauk]
|
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Экспериментальные и компьютерные подходы к изучению регуляторных элементов в эукариотических генах
Меркулова Т. И., Ощепков Д. Ю., Игнатьева Е. В., Ананько Е.В., Левицкий В.Г., Васильев Г. В., Климова Н. В., Меркулов В.М., Колчанов Н.А.
[BIOCHEMISTRY-MOSCOW+]
|
| 2006 |
Potential binding sites for SF-1: Recognition by the SiteGA method, experimental verification, and search for new target genes
Klimova NV, Levitsky VG, Ignatieva EV, Vasiliev GV, Kobzev VF, Busygina TV, Merkulova TI, Kolchanov NA
[Molecular Biology]
|
|
Потенциальные сайты связывания фактора транскрипции SF-1: выявление методом SiteGA, экспериментальная проверка и поиск новых генов-мишеней
Н.В.Климова, В.Г.Левицкий, Е.В.Игнатьева, Г.В.Васильев, В.Ф.Кобзев, Т.В.Бусыгина, Т.И.Меркулова, Н.А.Колчанов
[Molecular Biology]
|
| 2005 |
Binding Sites for Transcription Factor SF-1 in Promoter Regions of Genes Encoding Mouse Steroidogenesis Enzymes 3βHSDI and P450c17
T.V. Busygina, G.V. Vasiliev, N.V. Klimova, E.V. Ignatieva, A.V. Osadchuk
[BIOCHEMISTRY-MOSCOW+]
|
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Cаийты связывания транскрипционного фактора SF1 в промоторных районах генов, кодирующих ферменты стероидогенеза 3бетаГСДI и Р450с17 мыши
Бусыгина Т.В., Васильев Г.В., Климова Н.В., Игнатьева Е.В., Осадчук А.В.
[Биохимия]
|
|
Mining genome variation to associate genetic disease with mutation alterations and ortho/paralogous polimorphysms in transcription factor binding site.
Ponomarenko J.V., Orlova G.V., Merkulova T.M., Vasiliev G.V., and Ponomarenko M.P.
[INT J ARTIF INTELL T]
|
| 2003 |
Predisposition to alcoholism, tryptophan oxygenase activity, and structure of intron 6 in the corresponding gene of C57BL/6J, CC57BR/Mv, and BALB/cJ mice
Kaledin V.I., Klimova N.V., Vasil'ev G.V.Ivanova E.A., Vasil'eva E.D., Il'nitskaya S.I.
[B EXP BIOL MED+]
|
|
Изучение предрасположенности к алкоголизму, активности триптофаноксигеназы и структуры интрона 6 соответствующего гена у мышей линий C57BL/6J, CC57BR/Mv и BALB/cJ
Каледин В.И., Климова Н.В., Васильев Г.В., Иванова Е.А., Васильева Е.Д., Ильницкая С.И.
[B EXP BIOL MED+]
|
| 2002 |
rSNP_Guide: an integrated database-tools system for studying SNPs and site-directed mutations in transcription factor binding sites
Ponomarenko J.V., Orlova G.V., Merkulova T.I., Gorshkova (Antontseva) E.V., Fokin O.N., Vasiliev G.V., Frolov A.S., Ponomarenko M.P.
[HUM MUTAT]
|
| 2001 |
rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations
Ponomarenko JV, Merkulova TI, Vasiliev GV, Levashova ZB, Orlova GV, Lavryushev SV, Fokin ON, Ponomarenko MP, Frolov AS, Sarai A.
[NUCLEIC ACIDS RES]
|
| 2000 |
Точковые мутации в районе 663-666 п.н. интрона 6 гена триптофаноксигеназы, связанные с рядом психических расстройств, разрушают сайт связывания фактора транскрипции YY1.
Васильев Г.В., Меркулов В.М., Кобзев В.Ф., Меркулова Т.И., Пономаренко М.П., Пономаренко Ю.В., Подколодная О.А., Колчанов Н.А.
[Molecular Biology]
|
| 1999 |
Point mutations within 663-666 bp of intron 6 of the human TDO2 gene, associated with a number of psychiatric disorders, damage the YY-1 transcription factor binding site.
Vasiliev G.V., Merkulov V.M., Kobzev V.F., Merkulova T.I., Ponomarenko M.P., Kolchanov N.A.
[FEBS LETT]
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